Package index • genoaligner

Package

genoaligner-package genoaligner: genoaligner: GPU-portable pairwise sequence alignment

Pairwise alignment

align_edit(): Align pairs by edit distance
align_sw(): Smith-Waterman local alignment

Multiple sequence alignment

msa_align(): Multiple sequence alignment (DNA or protein)
msa_codon(): Codon-aware multiple sequence alignment
as_dnabin(): Coerce a genoaligner_msa alignment to ape::DNAbin

Data

lepus_cytb: Cytochrome b sequences from four leporid species