Coerce a genoaligner_msa alignment to ape::DNAbin

Requires the ape package (in Suggests; used here only).

Usage

as_dnabin(x)

Arguments

x

A genoaligner_msa object.

Value

An ape::DNAbin matrix.

Examples

if (requireNamespace("ape", quietly = TRUE)) {
    as_dnabin(msa_align(c("ACGTACGT", "ACGTTCGT")))
}
#> 2 DNA sequences in binary format stored in a matrix.
#> 
#> All sequences of same length: 8 
#> 
#> Labels:
#> seq1
#> seq2
#> 
#> Base composition:
#>     a     c     g     t 
#> 0.188 0.250 0.250 0.312 
#> (Total: 16 bases)