Changelog

Source: NEWS.md

ancemb 0.1.0

• First public release under alrobles/ancemb.
• Optional reticulate backend adapter for NumPy/NPZ embedding arrays (configure_python_backend(), load_embedding_array()).
• Trees without branch lengths now fail fast with an explicit error.
• Exported pure-R simulation and reconstruction references (simulate_*_embedding_r(), reconstruct_ancestral_*_r()).

ancemb 0.0.1

• Initial CRAN-ready package skeleton.
• Exported prepare_embedding_data(), fit_embedding_bm(), fit_embedding_ou(), extract_ancestral() and run_bayesian_comparison().
• Added pure-R reference implementations (*_r) for BM/OU simulation and ancestral reconstruction.
• Added cross-method testthat tests comparing Stan posterior means to phytools::fastAnc and the pure-R reference.
• Set up pkgdown documentation and GitHub Actions for R-CMD-check and pkgdown deployment.