Align incidence matrix and phylogenetic distance matrix — align_phylopred_inputs • phylopred

Validates both inputs and reorders the columns of incidence to match the column order of phydist.

Usage

align_phylopred_inputs(incidence, phydist)

Arguments

incidence: A binary incidence matrix (rows = parasites, cols = hosts).
phydist: A square phylogenetic distance matrix among hosts.

Value

A named list with:

incidence: The incidence matrix with columns reordered to match phydist.
phydist: The (unchanged) phylogenetic distance matrix.

Examples

incidence <- prepare_incidence_matrix(beetleTreeInteractions)
aligned <- align_phylopred_inputs(incidence, phy_dist)