Write an Omission / Threshold CSV

Computes cumulative predictions at all background + presence locations and derives nine standard threshold statistics, writing the result to <output_dir>/<species>_omission.csv. The output format mirrors density/Runner.java::writeCumulativeIndex().

Usage

maxent_write_omission_csv(
  model,
  env_grids,
  feature_names,
  presence_rows,
  presence_cols,
  output_dir,
  species,
  test_rows = NULL,
  test_cols = NULL
)

Arguments

model

External pointer to a trained FeaturedSpace object.

env_grids

List of external pointers to Grid<float> objects.

feature_names

Character vector of environment variable names.

presence_rows

Integer vector of presence row indices (0-based).

presence_cols

Integer vector of presence column indices (0-based).

output_dir

Character: directory for output files.

species

Character: species name (used in the filename).

test_rows

Integer vector of test row indices (0-based) or NULL (default).

test_cols

Integer vector of test column indices (0-based) or NULL (default).

Value

Invisibly returns the path to the written CSV file.

Examples

if (FALSE) { # \dontrun{
maxent_write_omission_csv(model, list(g1, g2), c("bio1", "bio12"),
  pres_rows, pres_cols, output_dir = tempdir(), species = "Sp1")
} # }